This hands-on workshop is directed to users working on biology and biomedicine that require objective analysis of microscopy image data. ImageJ, its distribution Fiji and ICY are widely-used public-domain software for microscopy image analysis. ImageJ/FIJI are based on an open source architecture, which enables functionality extensibility using plugins and Macros. ICY is an open source software that is compatible with ImageJ plugins but which enables other functionalities.
In this context, we will focus on the basic operation of both ImageJ/FIJI and ICY as well as several plugins for the solution of common issues in image analysis such as segmentation, particle analysis, co-localization, deconvolution, spot count and particle tracking. A tutorial on ImageJ/FIJI plugin programming will also take place together with scripting and graphical programming for ICY.
14-16 APRIL 2014
atmosfera m
Rua Júlio Dinis, nº 158/160 4050-012 Porto
SPEAKERS:
Daniel Sage
Head Software developer at Biomedical Imaging Group (BIG) at Ecole Polytechnique Fédérale de Lausanne (EPFL). Working with ImageJ/FIJI for microscopy image analysis and teaching.
Fabrice de Chaumont
Researcher at the quantitative analysis unity at the Pasteur Institute, Paris. Responsible for Icy's kernel architecture, software code and website.
ORGANIZATION:
Pedro Quelhas, INEB, Porto
Maria Lazaro, INEB, Porto
Paula Sampaio, IBMC, Porto
Susana Carrilho, INEB, Porto
