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Book
Quelhas, P., Nieuwland, J., Dewitte, W., Mendonça, A. M., Murray, J., & Campilho, A. (2011). Arabidopsis thaliana automatic cell file detection and cell length estimation. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)Lect. Notes Comput. Sci. (Vol. 6754 LNCS, pp. 1 - 11).
Esteves, T., Valente, M., Nascimento, D. S., Pinto-Do-Ó, P., & Quelhas, P. (2011). Automatic and semi-automatic analysis of the extension of myocardial infarction in an experimental murine model. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) (Vol. 6669 LNCS, pp. 151 - 158).
Esteves, T., Valente, M., Nascimento, D. S., Pinto-Do-Ó, P., & Quelhas, P. (2011). Automatic and semi-automatic analysis of the extension of myocardial infarction in an experimental murine model. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)Lect. Notes Comput. Sci. (Vol. 6669 LNCS, pp. 151 - 158).
Leal, P., Ferro, L., Marques, M., Romão, S., Cruz, T., Tomá, A. M., Castro, H., & Quelhas, P. (2012). Automatic assessment of Leishmania infection indexes on in vitro macrophage cell cultures. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)Lect. Notes Comput. Sci. (Vol. 7325 LNCS, pp. 432 - 439).
Marcuzzo, M., Guichard, T., Quelhas, P., Mendonça, A. M., & Campilho, A. (2009). Cell division detection on the arabidopsis thaliana root. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)Lect. Notes Comput. Sci. (Vol. 5524 LNCS, pp. 168 - 175).
Marcuzzo, M., Quelhas, P., Mendonça, A. M., & Campilho, A. (2009). Evaluation of symmetry enhanced sliding band filter for plant cell nuclei detection in low contrast noisy fluorescent images. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)Lect. Notes Comput. Sci. (Vol. 5627 LNCS, pp. 824 - 831).
Marcuzzo, M., Quelhas, P., Campilho, A., Mendonça, A. M., & Campilho, A. (2008). A hybrid approach for arabidopsis root cell image segmentation. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)Lect. Notes Comput. Sci. (Vol. 5112 LNCS, pp. 739 - 749).
Quelhas, P., Mendonça, A. M., & Campilho, A. (2010). Optical flow based Arabidopsis thaliana root meristem cell division detection. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)Lect. Notes Comput. Sci. (Vol. 6112 LNCS, pp. 217 - 226).
Conference Paper
Marcuzzo, M., Quelhas, P., Campilho, A., Mendonça, A. M., & Campilho, A. (2008). Automatic cell segmentation from confocal microscopy images of the Arabidopsis root. In 2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Proceedings, ISBIIEEE Int. Symp. Biomed. Imaging: Nano Macro, Proc., ISBI (pp. 712 - 715).
Esteves, T., Valente, M., Nascimento, D. S., Pinto-Do-Ó, P., & Quelhas, P. (2012). Automatic myocardial infarction size extraction in an experimental murine model using an anatomical model. In Proceedings - International Symposium on Biomedical ImagingIEEE Comput. Soc. Conf. Comput. Vis. Pattern Recogn. (pp. 310 - 313).
Esteves, T., Valente, M., Nascimento, D. S., Pinto-Do-Ó, P., & Quelhas, P. (2012). Automatic myocardial infarction size extraction in an experimental murine model using an anatomical model. In Proceedings - International Symposium on Biomedical Imaging (pp. 310 - 313).
Chen, Y., Quelhas, P., & Campilho, A. (2011). Low frame rate cell tracking: A Delaunay graph matching approach. In Proceedings - International Symposium on Biomedical ImagingIEEE Comput. Soc. Conf. Comput. Vis. Pattern Recogn. (pp. 1015 - 1018).
Marcuzzo, M., Quelhas, P., Mendonça, A. M., & Campilho, A. (2008). Tracking of Arabidopsis thaliana root cells in time-lapse microscopy. In Proceedings - International Conference on Pattern RecognitionProc. Int. Conf. Pattern Recognit.
Journal Article
Sanz, L., Dewitte, W., Forzani, C., Patell, F., Nieuwland, J., Wen, B., Quelhas, P., de Jager, S., Titmus, C., Campilho, A., Ren, H., Estelle, M., Wang, H., & Murray, J. A. H. (2011). The Arabidopsis D-Type Cyclin CYCD2;1 and the Inhibitor ICK2/KRP2 Modulate Auxin-Induced Lateral Root Formation. Plant CellPlant Cell, 23(2), 641 - 660.
Marcuzzo, M., Quelhas, P., Campilho, A., Maria Mendonça, A., & Campilho, A. (2009). Automated Arabidopsis plant root cell segmentation based on SVM classification and region merging. Computers in Biology and MedicineComput. Biol. Med., 39(9), 785 - 793.
Quelhas, P., Marcuzzo, M., Mendonça, A. M., & Campilho, A. (2010). Cell nuclei and cytoplasm joint segmentation using the sliding band filter. IEEE Transactions on Medical ImagingIEEE Trans. Med. Imaging, 29(8), 1463 - 1473.
Monay, F., Quelhas, P., Odobez, J. - M., & Gatica-Perez, D. (2009). Contextual classification of image patches with latent aspect models. Eurasip Journal on Image and Video ProcessingEurasip J. Image Video Process., 2009.
Esteves, T., Quelhas, P., Mendonça, A. M., & Campilho, A. (2012). Gradient convergence filters and a phase congruency approach for in vivo cell nuclei detection. Machine Vision and ApplicationsMach Vision Appl, 23(4), 623 - 638.
Nascimento, D. S., Valente, M., Esteves, T., De Fátima De Pina, M., Guedes, J. G., Freire, A., Quelhas, P., & Pinto-Do-Ó, P. (2011). MIQuant - semi-automation of infarct size assessment in models of cardiac ischemic injury. PLoS ONE, 6(9).